Eubacterium nodatum

Updated : November 15, 2023

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E. nodatum is significant in oral microbiota and is closely associated with periodontal diseases, including gingivitis and periodontitis. Additionally, it has been linked to systemic infections such as endocarditis and brain abscesses. 

Regarding its epidemiology, various studies provide insights into its prevalence and distribution. Könönen et al. researched 98 patients with chronic periodontitis and 24 healthy controls, finding that Eubacterium nodatum was detected in 18.4% of subgingival plaque samples from periodontitis patients and 8.3% of samples from healthy controls.

Notably, its prevalence was significantly higher in patients with periodontitis, especially in deeper pockets, and displayed positive correlations with other periodontal pathogens like Porphyromonas gingivalis and Tannerella forsythia.  

Kamma et al. delved into the occurrence of Eubacterium nodatum in 50 patients with aggressive periodontitis and 50 with chronic periodontitis. Employing polymerase chain reaction (PCR) for detection, they found that Eubacterium nodatum was present in 28% of aggressive periodontitis patients and 26% of chronic periodontitis patients.

While there was no significant difference between the two groups regarding Eubacterium nodatum occurrence, it was more frequently detected in generalized forms of periodontitis than localized forms.  

In a case report by Nakano et al., a rare instance of Eubacterium nodatum causing brain abscesses was documented in a 64-year-old man with a history of dental extraction. The patient’s condition presented with neurological symptoms, and subsequent imaging revealed multiple brain abscesses. Surgical drainage and antibiotic therapy led to successful recovery, with culture identifying Eubacterium nodatum as the causative agent.  

The epidemiology of E. nodatum further highlights that it is a member of the red complex bacteria, closely associated with periodontal disease, alongside Porphyromonas gingivalis, Tannerella forsythia, and Treponema denticola. Its prevalence in subgingival plaque samples from periodontitis patients ranges from 10% to 20%, with an association between prevalence and disease severity.

Eubacterium nodatum has been isolated from various infection sites, including the jawbone, intrauterine contraceptive devices, lungs, and the chest cavity, although such cases are relatively rare and often associated with underlying conditions. Notably, its prevalence tends to be higher in women, older individuals, and smokers. 

 

Classification and Structure: 

Kingdom: Bacteria 

Phylum: Bacillota 

Class: Clostridia 

Order: Clostridiales 

Family: Eubacteriaceae 

Genus: Eubacterium 

Species: E. nodatum 

E. nodatum is classified as a non-motile, gram-positive, obligate anaerobic bacterium.

E. nodatum is typically rod-shaped, although its morphology can vary and include straight and curved forms. These rods have a length ranging from approximately 1.5 to 2.5 micrometers and a width of about 0.5 to 0.8 micrometers.

The cell wall comprises peptidoglycans, complex molecules formed by cross-linked chains of sugars and amino acids. This peptidoglycan structure provides strength and shape to the cell wall.  

This bacterium exhibits an asaccharolytic metabolic profile, meaning it cannot utilize sugars as a source of energy. Instead, E. nodatum primarily produces acetate and butyrate as its main metabolic products. 

Eubacterium nodatum exhibits a notable genetic diversity, a characteristic uncovered through molecular typing methods like pulsed-field gel electrophoresis and multilocus sequence typing. This genetic diversity contributes to its adaptability to evolve in response to changing environmental conditions.

Furthermore, E. nodatum possesses a capsule composed of glucose, galactose, rhamnose, and glucuronic acid, which is pivotal in enhancing its virulence. This capsule facilitates the bacterium’s adherence to host cells and fosters the formation of biofilms, contributing to its pathogenicity.  

Additionally, Eubacterium nodatum employs several virulence factors to evade the host’s immune defenses. Two essential proteins, SlpA and SlpB, are crucial in this regard. SlpA binds to sialic acid on host cells, inhibiting phagocytosis by macrophages, while SlpB interferes with opsonization and complement activation by binding to immunoglobulins IgG and IgA.

Moreover, E. nodatum produces lipopolysaccharides (LPS) similar to those found in Porphyromonas gingivalis, another notorious periodontal pathogen. One prominent strain of E. nodatum is ATCC 33099, which serves as the type strain and was initially isolated from the subgingival region of the mouth. 

 

The pathogenesis of Eubacterium nodatum is closely intertwined with its role as a member of the red complex bacteria, primarily associated with periodontal disease. Periodontal disease is a chronic inflammation that affects the gums & the supporting teeth structures, potentially leading to tooth loss and other systemic complications.

Within this context, E. nodatum exerts its pathogenic influence by adhering to the tooth surface and forming molar tooth colonies, clusters of bacteria that contribute to enamel and dentin damage. Simultaneously, the bacterium can infiltrate the tissues, inciting inflammatory responses that destroy tissue.  

In addition, E. nodatum‘s metabolic activities, characterized by the production of acetate and butyrate as primary products, create an acidic environment, favoring its growth and survival. This acidic milieu can further exacerbate the destructive processes within the oral cavity. E. nodatum contributes to its pathogenicity by producing proteases and other enzymes capable of degrading the extracellular matrix and host defense molecules. 

E. nodatum exhibits a high genetic diversity, suggesting its remarkable adaptive potential to evolve rapidly in response to changing environmental conditions. E. nodatum interacts with other bacteria, such as Porphyromonas gingivalis, Tannerella forsythia, and Treponema denticola, within the oral microbiome, forming a synergistic consortium.

This cooperative interaction enhances their collective virulence and pathogenicity, accentuating the severity of periodontal disease. Beyond the oral cavity, E. nodatum can cause infections in various parts of the body, including the jawbone, intrauterine contraceptive devices, lungs, and the chest cavity. However, such cases are rare and often associated with underlying conditions or predisposing factors.

E. nodatum reaches these distant sites through hematogenous spread or direct extension from the oral cavity. Depending on the site of infection, E. nodatum can induce inflammation, abscess formation, pain, and other symptoms, thereby contributing to localized or systemic complications. 

 

The oral mucosa is a robust physical barrier against invading harmful substances and microbes. Comprising stratified epithelial cells & tight cell-cell junctions, this continuous layer acts as the first line of defense, thwarting the penetration of noxious agents and microbes into the oral cavity. Furthermore, the oral microbiome plays a pivotal role in fending off Eubacterium nodatum.

It does so through mechanisms such as competition for nutrients and space, the production of antimicrobial substances, & the modulation of the host immunity. In addition to these defenses, epithelial cells within the oral mucosa contribute by producing antimicrobial peptides, including defensins and cathelicidins, which can eliminate or hinder the growth of E. nodatum.  

The innate immune system has a primary role in recognizing and eradicating Eubacterium nodatum. This defense mechanism employs diverse strategies such as opsonization, phagocytosis, oxidative burst, and inflammation to neutralize the bacterium. The adaptive immune system comprises B cells and T cells.

B cells generate antibodies that bind to E. nodatum, neutralizing its virulence factors or facilitating its clearance via the innate immune system. On the other hand, T cells can assist B cells in antibody production or directly eliminate E. nodatum-infected cells by releasing cytotoxic molecules. 

 

Clinical manifestations of Eubacterium nodatum infections can vary but are predominantly associated with conditions in the oral cavity and other body parts. These manifestations include:  

Oral Cavity Infections:E. nodatum is strongly linked to chronic periodontitis, a severe gum disease. Symptoms typically include inflammation, bleeding, and pus formation in the gums. These oral infections can progress and, if left untreated, can lead to tooth loss.  

Tooth Damage: The bacterium contributes to the formation of molar tooth colonies, clusters of bacteria that adhere to tooth surfaces. These colonies can damage enamel and dentin, further exacerbating oral health issues.  

Jaw Infections:E. nodatum infections can extend beyond the gums, causing a lumpy jaw. This chronic infection affects the jawbone, leading to painful swelling and abscesses in the affected area.  

Pelvic Inflammatory Disease: In rare instances, E. nodatum can lead to infections associated with intrauterine contraceptive devices (IUDs). When the bacterium colonizes the IUD, it can trigger pelvic inflammatory disease, endometritis, or even septic abortion, posing significant risks to reproductive health.  

Pleuropulmonary Infections: Although uncommon, Eubacterium nodatum infections can also affect the lungs and the chest cavity lining, resulting in pleuropulmonary infections. These infections can lead to respiratory symptoms and require prompt medical attention. 

 

Diagnosing Eubacterium nodatum can be challenging due to its slow and poor growth on standard media. However, several diagnostic tests and techniques are available to detect and identify this bacterium:  

Protein-profile analysis: This method employs sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) to separate bacterial proteins by molecular weight. By comparing the protein profile of the isolated bacterium with reference strains, E. nodatum can be distinguished from other asaccharolytic eubacteria. This distinctive protein profile serves as a valuable diagnostic marker.  

Metabolic end-product analysis: This approach involves measuring the synthesis of volatile fatty acids (VFAs) by the bacteria in a liquid medium. E. nodatum is characterized by its predominant production of acetate and butyrate. Furthermore, its growth is stimulated by L-lysine. Monitoring the production of phenylacetate can also serve as a specific marker for E. nodatum and some related species.  

API ATB32A identification kit: A commercially available system, the API ATB32A identification kit, utilizes 32 biochemical tests to identify anaerobic bacteria. E. nodatum can be identified through positive reactions for arginine hydrolysis, esculin hydrolysis, and indole production, coupled with negative reactions for catalase, urease, gelatin hydrolysis, and nitrate reduction. This kit provides a reliable means of identifying E. nodatum.  

Molecular methods: Molecular diagnostic techniques leverage DNA or RNA sequences to identify bacteria based on their genetic similarity. Polymerase chain reaction (PCR), hybridization probes, and sequencing are among the molecular methods employed. E. nodatum possesses a unique 16S rRNA gene sequence among the eubacteria, rendering it an ideal target for identification through molecular techniques. 

  • Avoid Smoking: Smoking poses a significant risk to overall health and weakens the immune system, making individuals more susceptible to periodontal diseases and infections like those caused by E. nodatum. Quitting smoking is crucial for reducing this risk. 
  • Oral Hygiene: Regular oral hygiene is paramount in preventing E. nodatum infections. This includes brushing teeth at least twice daily, flossing, using mouthwash as recommended, and scheduling routine dental check-ups and cleanings. 
  • Maintain a Balanced Diet: A well-balanced diet rich in nutrients is essential for maintaining oral health. Foods containing vitamin C, calcium, and antioxidants can help prevent inflammation and infection. Conversely, limiting sugar and starch consumption is important, as these substances promote bacterial growth and acid production in the mouth. 
  • Individuals with diabetes should actively manage their condition and regularly monitor their blood glucose levels. Diabetes can impair kidney function and increase susceptibility to infections, including those caused by E. nodatum. 

 

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Eubacterium nodatum

Updated : November 15, 2023

Mail Whatsapp PDF Image



E. nodatum is significant in oral microbiota and is closely associated with periodontal diseases, including gingivitis and periodontitis. Additionally, it has been linked to systemic infections such as endocarditis and brain abscesses. 

Regarding its epidemiology, various studies provide insights into its prevalence and distribution. Könönen et al. researched 98 patients with chronic periodontitis and 24 healthy controls, finding that Eubacterium nodatum was detected in 18.4% of subgingival plaque samples from periodontitis patients and 8.3% of samples from healthy controls.

Notably, its prevalence was significantly higher in patients with periodontitis, especially in deeper pockets, and displayed positive correlations with other periodontal pathogens like Porphyromonas gingivalis and Tannerella forsythia.  

Kamma et al. delved into the occurrence of Eubacterium nodatum in 50 patients with aggressive periodontitis and 50 with chronic periodontitis. Employing polymerase chain reaction (PCR) for detection, they found that Eubacterium nodatum was present in 28% of aggressive periodontitis patients and 26% of chronic periodontitis patients.

While there was no significant difference between the two groups regarding Eubacterium nodatum occurrence, it was more frequently detected in generalized forms of periodontitis than localized forms.  

In a case report by Nakano et al., a rare instance of Eubacterium nodatum causing brain abscesses was documented in a 64-year-old man with a history of dental extraction. The patient’s condition presented with neurological symptoms, and subsequent imaging revealed multiple brain abscesses. Surgical drainage and antibiotic therapy led to successful recovery, with culture identifying Eubacterium nodatum as the causative agent.  

The epidemiology of E. nodatum further highlights that it is a member of the red complex bacteria, closely associated with periodontal disease, alongside Porphyromonas gingivalis, Tannerella forsythia, and Treponema denticola. Its prevalence in subgingival plaque samples from periodontitis patients ranges from 10% to 20%, with an association between prevalence and disease severity.

Eubacterium nodatum has been isolated from various infection sites, including the jawbone, intrauterine contraceptive devices, lungs, and the chest cavity, although such cases are relatively rare and often associated with underlying conditions. Notably, its prevalence tends to be higher in women, older individuals, and smokers. 

 

Classification and Structure: 

Kingdom: Bacteria 

Phylum: Bacillota 

Class: Clostridia 

Order: Clostridiales 

Family: Eubacteriaceae 

Genus: Eubacterium 

Species: E. nodatum 

E. nodatum is classified as a non-motile, gram-positive, obligate anaerobic bacterium.

E. nodatum is typically rod-shaped, although its morphology can vary and include straight and curved forms. These rods have a length ranging from approximately 1.5 to 2.5 micrometers and a width of about 0.5 to 0.8 micrometers.

The cell wall comprises peptidoglycans, complex molecules formed by cross-linked chains of sugars and amino acids. This peptidoglycan structure provides strength and shape to the cell wall.  

This bacterium exhibits an asaccharolytic metabolic profile, meaning it cannot utilize sugars as a source of energy. Instead, E. nodatum primarily produces acetate and butyrate as its main metabolic products. 

Eubacterium nodatum exhibits a notable genetic diversity, a characteristic uncovered through molecular typing methods like pulsed-field gel electrophoresis and multilocus sequence typing. This genetic diversity contributes to its adaptability to evolve in response to changing environmental conditions.

Furthermore, E. nodatum possesses a capsule composed of glucose, galactose, rhamnose, and glucuronic acid, which is pivotal in enhancing its virulence. This capsule facilitates the bacterium’s adherence to host cells and fosters the formation of biofilms, contributing to its pathogenicity.  

Additionally, Eubacterium nodatum employs several virulence factors to evade the host’s immune defenses. Two essential proteins, SlpA and SlpB, are crucial in this regard. SlpA binds to sialic acid on host cells, inhibiting phagocytosis by macrophages, while SlpB interferes with opsonization and complement activation by binding to immunoglobulins IgG and IgA.

Moreover, E. nodatum produces lipopolysaccharides (LPS) similar to those found in Porphyromonas gingivalis, another notorious periodontal pathogen. One prominent strain of E. nodatum is ATCC 33099, which serves as the type strain and was initially isolated from the subgingival region of the mouth. 

 

The pathogenesis of Eubacterium nodatum is closely intertwined with its role as a member of the red complex bacteria, primarily associated with periodontal disease. Periodontal disease is a chronic inflammation that affects the gums & the supporting teeth structures, potentially leading to tooth loss and other systemic complications.

Within this context, E. nodatum exerts its pathogenic influence by adhering to the tooth surface and forming molar tooth colonies, clusters of bacteria that contribute to enamel and dentin damage. Simultaneously, the bacterium can infiltrate the tissues, inciting inflammatory responses that destroy tissue.  

In addition, E. nodatum‘s metabolic activities, characterized by the production of acetate and butyrate as primary products, create an acidic environment, favoring its growth and survival. This acidic milieu can further exacerbate the destructive processes within the oral cavity. E. nodatum contributes to its pathogenicity by producing proteases and other enzymes capable of degrading the extracellular matrix and host defense molecules. 

E. nodatum exhibits a high genetic diversity, suggesting its remarkable adaptive potential to evolve rapidly in response to changing environmental conditions. E. nodatum interacts with other bacteria, such as Porphyromonas gingivalis, Tannerella forsythia, and Treponema denticola, within the oral microbiome, forming a synergistic consortium.

This cooperative interaction enhances their collective virulence and pathogenicity, accentuating the severity of periodontal disease. Beyond the oral cavity, E. nodatum can cause infections in various parts of the body, including the jawbone, intrauterine contraceptive devices, lungs, and the chest cavity. However, such cases are rare and often associated with underlying conditions or predisposing factors.

E. nodatum reaches these distant sites through hematogenous spread or direct extension from the oral cavity. Depending on the site of infection, E. nodatum can induce inflammation, abscess formation, pain, and other symptoms, thereby contributing to localized or systemic complications. 

 

The oral mucosa is a robust physical barrier against invading harmful substances and microbes. Comprising stratified epithelial cells & tight cell-cell junctions, this continuous layer acts as the first line of defense, thwarting the penetration of noxious agents and microbes into the oral cavity. Furthermore, the oral microbiome plays a pivotal role in fending off Eubacterium nodatum.

It does so through mechanisms such as competition for nutrients and space, the production of antimicrobial substances, & the modulation of the host immunity. In addition to these defenses, epithelial cells within the oral mucosa contribute by producing antimicrobial peptides, including defensins and cathelicidins, which can eliminate or hinder the growth of E. nodatum.  

The innate immune system has a primary role in recognizing and eradicating Eubacterium nodatum. This defense mechanism employs diverse strategies such as opsonization, phagocytosis, oxidative burst, and inflammation to neutralize the bacterium. The adaptive immune system comprises B cells and T cells.

B cells generate antibodies that bind to E. nodatum, neutralizing its virulence factors or facilitating its clearance via the innate immune system. On the other hand, T cells can assist B cells in antibody production or directly eliminate E. nodatum-infected cells by releasing cytotoxic molecules. 

 

Clinical manifestations of Eubacterium nodatum infections can vary but are predominantly associated with conditions in the oral cavity and other body parts. These manifestations include:  

Oral Cavity Infections:E. nodatum is strongly linked to chronic periodontitis, a severe gum disease. Symptoms typically include inflammation, bleeding, and pus formation in the gums. These oral infections can progress and, if left untreated, can lead to tooth loss.  

Tooth Damage: The bacterium contributes to the formation of molar tooth colonies, clusters of bacteria that adhere to tooth surfaces. These colonies can damage enamel and dentin, further exacerbating oral health issues.  

Jaw Infections:E. nodatum infections can extend beyond the gums, causing a lumpy jaw. This chronic infection affects the jawbone, leading to painful swelling and abscesses in the affected area.  

Pelvic Inflammatory Disease: In rare instances, E. nodatum can lead to infections associated with intrauterine contraceptive devices (IUDs). When the bacterium colonizes the IUD, it can trigger pelvic inflammatory disease, endometritis, or even septic abortion, posing significant risks to reproductive health.  

Pleuropulmonary Infections: Although uncommon, Eubacterium nodatum infections can also affect the lungs and the chest cavity lining, resulting in pleuropulmonary infections. These infections can lead to respiratory symptoms and require prompt medical attention. 

 

Diagnosing Eubacterium nodatum can be challenging due to its slow and poor growth on standard media. However, several diagnostic tests and techniques are available to detect and identify this bacterium:  

Protein-profile analysis: This method employs sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) to separate bacterial proteins by molecular weight. By comparing the protein profile of the isolated bacterium with reference strains, E. nodatum can be distinguished from other asaccharolytic eubacteria. This distinctive protein profile serves as a valuable diagnostic marker.  

Metabolic end-product analysis: This approach involves measuring the synthesis of volatile fatty acids (VFAs) by the bacteria in a liquid medium. E. nodatum is characterized by its predominant production of acetate and butyrate. Furthermore, its growth is stimulated by L-lysine. Monitoring the production of phenylacetate can also serve as a specific marker for E. nodatum and some related species.  

API ATB32A identification kit: A commercially available system, the API ATB32A identification kit, utilizes 32 biochemical tests to identify anaerobic bacteria. E. nodatum can be identified through positive reactions for arginine hydrolysis, esculin hydrolysis, and indole production, coupled with negative reactions for catalase, urease, gelatin hydrolysis, and nitrate reduction. This kit provides a reliable means of identifying E. nodatum.  

Molecular methods: Molecular diagnostic techniques leverage DNA or RNA sequences to identify bacteria based on their genetic similarity. Polymerase chain reaction (PCR), hybridization probes, and sequencing are among the molecular methods employed. E. nodatum possesses a unique 16S rRNA gene sequence among the eubacteria, rendering it an ideal target for identification through molecular techniques. 

  • Avoid Smoking: Smoking poses a significant risk to overall health and weakens the immune system, making individuals more susceptible to periodontal diseases and infections like those caused by E. nodatum. Quitting smoking is crucial for reducing this risk. 
  • Oral Hygiene: Regular oral hygiene is paramount in preventing E. nodatum infections. This includes brushing teeth at least twice daily, flossing, using mouthwash as recommended, and scheduling routine dental check-ups and cleanings. 
  • Maintain a Balanced Diet: A well-balanced diet rich in nutrients is essential for maintaining oral health. Foods containing vitamin C, calcium, and antioxidants can help prevent inflammation and infection. Conversely, limiting sugar and starch consumption is important, as these substances promote bacterial growth and acid production in the mouth. 
  • Individuals with diabetes should actively manage their condition and regularly monitor their blood glucose levels. Diabetes can impair kidney function and increase susceptibility to infections, including those caused by E. nodatum. 

 

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